.. _userGuide:

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User Guide
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Command Line Interface
======================

The PQAnalysis package does not only provide an API but also a number of different command line tools. These tools can be categorized into two groups primary groups: pure command line tools and tools that are based on an input file. 

Input file based tools
----------------------

For more details on the grammar and syntax of the input file see :ref:`inputFile`.

- :ref:`rdf<cli.rdf>`

Pure command line tools
-----------------------

- :ref:`continue_input<cli.continue_input>`
- :ref:`rst2xyz<cli.rst2xyz>`
- :ref:`traj2qmcfc<cli.traj2qmcfc>`
- :ref:`traj2box<cli.traj2box>`