All modules for which code is available

• PQAnalysis.analysis.rdf.api
• PQAnalysis.analysis.rdf.exceptions
• PQAnalysis.analysis.rdf.rdf
• PQAnalysis.analysis.rdf.rdf_input_file_reader
• PQAnalysis.analysis.rdf.rdf_output_file_writer
• PQAnalysis.atomic_system.atomic_system
• PQAnalysis.atomic_system.exceptions
• PQAnalysis.cli.add_molecules
• PQAnalysis.cli.build_nep_traj
• PQAnalysis.cli.continue_input
• PQAnalysis.cli.gen2xyz
• PQAnalysis.cli.main
• PQAnalysis.cli.rdf
• PQAnalysis.cli.rst2xyz
• PQAnalysis.cli.traj2box
• PQAnalysis.cli.traj2qmcfc
• PQAnalysis.cli.xyz2gen
• PQAnalysis.core.api
• PQAnalysis.core.atom.atom
• PQAnalysis.core.atom.element
• PQAnalysis.core.cell.cell
• PQAnalysis.core.exceptions
• PQAnalysis.core.residue
• PQAnalysis.exceptions
• PQAnalysis.formats
• PQAnalysis.io.api
• PQAnalysis.io.base
• PQAnalysis.io.box_writer
• PQAnalysis.io.conversion_api
• PQAnalysis.io.energy_file_reader
• PQAnalysis.io.exceptions
• PQAnalysis.io.formats
• PQAnalysis.io.gen_file.api
• PQAnalysis.io.gen_file.exceptions
• PQAnalysis.io.gen_file.gen_file_reader
• PQAnalysis.io.gen_file.gen_file_writer
• PQAnalysis.io.info_file_reader
• PQAnalysis.io.input_file_reader.exceptions
• PQAnalysis.io.input_file_reader.formats
• PQAnalysis.io.input_file_reader.input_file_parser
• PQAnalysis.io.input_file_reader.pq.pq_input_file_reader
• PQAnalysis.io.input_file_reader.pq_analysis.pqanalysis_input_file_reader
• PQAnalysis.io.moldescriptor_reader
• PQAnalysis.io.nep.exceptions
• PQAnalysis.io.nep.nep_writer
• PQAnalysis.io.restart_file.api
• PQAnalysis.io.restart_file.exceptions
• PQAnalysis.io.restart_file.restart_reader
• PQAnalysis.io.restart_file.restart_writer
• PQAnalysis.io.topology_file.api
• PQAnalysis.io.topology_file.exceptions
• PQAnalysis.io.topology_file.topology_file_reader
• PQAnalysis.io.topology_file.topology_file_writer
• PQAnalysis.io.traj_file.api
• PQAnalysis.io.traj_file.exceptions
• PQAnalysis.io.traj_file.process_lines
• PQAnalysis.io.traj_file.trajectory_reader
• PQAnalysis.io.traj_file.trajectory_writer
• PQAnalysis.io.virial.api
• PQAnalysis.io.virial.virial_reader
• PQAnalysis.io.write_api
• PQAnalysis.physical_data.energy
• PQAnalysis.physical_data.exceptions
• PQAnalysis.tools.add_molecule
• PQAnalysis.tools.traj_to_com_traj
• PQAnalysis.topology.api
• PQAnalysis.topology.bonded_topology.angle
• PQAnalysis.topology.bonded_topology.bond
• PQAnalysis.topology.bonded_topology.bonded_topology
• PQAnalysis.topology.bonded_topology.dihedral
• PQAnalysis.topology.exceptions
• PQAnalysis.topology.selection
• PQAnalysis.topology.shake_topology
• PQAnalysis.topology.topology
• PQAnalysis.traj.api
• PQAnalysis.traj.exceptions
• PQAnalysis.traj.formats
• PQAnalysis.traj.trajectory
• PQAnalysis.type_checking
• PQAnalysis.utils.common
• PQAnalysis.utils.custom_logging
• PQAnalysis.utils.decorators
• PQAnalysis.utils.files
• PQAnalysis.utils.math
• PQAnalysis.utils.random
• PQAnalysis.utils.string