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PQAnalysis
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PQAnalysis

Use PQAnalysis

  • Getting Started
  • Learn the Python API
  • Example data
  • From trajectory to figure
  • Analyses
    • Radial Distribution Function
      • RDF: Theory and Validity
    • Mean Square Displacement
      • MSD: Theory and Validity
    • VACF and Spectra
      • VACF: Theory and Validity
    • Vibrational Analysis
      • Vibrations: Theory and Validity
    • Total Linear Momentum
  • Python Functions
  • Command Line
  • Files and Formats
    • Analysis input files
    • Atom selections
    • Analysis Output Files
    • Native format
    • CSV and TSV
    • XVG and xmgrace
    • Additional outputs
    • Converting existing output
    • RDF
    • MSD
    • VACF and charge-flux correlation
    • Broadened spectrum
    • Total linear momentum
    • Vibrational analysis
  • Package Reference
  • References

Develop PQAnalysis

  • Development
    • Architecture
    • Adding an Analysis
    • Scientific Validation
    • Release Process
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io.topology_file¶

A subpackage to handle trajectory files.

Submodules¶

  • api
  • exceptions
  • topology_file_reader
  • topology_file_writer
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