topology

A package containing classes and functions to handle molecular/atomic topologies.

Submodules

• api
• exceptions
• selection
• shake_topology
• topology

Subpackages

• topology.bonded_topology

Summary

__all__ Exceptions:

TopologyError

Exception raised for errors related to the Topology class

__all__ Classes:

Angle	A class to represent an angle in a molecular topology.
Bond	A class to represent a bond in a molecular topology.
BondedTopology	A class to represent a bonded topology in a molecular topology.
Dihedral	A class to represent a dihedral in a molecular topology.
Selection	A class for representing a selection.
Topology	A class for representing a topology.

__all__ Data:

SelectionCompatible

Type variable.

Reference